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Memory Issues when running tajima module #42

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mwersebe opened this issue Apr 4, 2022 · 0 comments
Open

Memory Issues when running tajima module #42

mwersebe opened this issue Apr 4, 2022 · 0 comments

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@mwersebe
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mwersebe commented Apr 4, 2022

Hi

I am running vcf-kit (version 0.2.6) from a anaconda installation. I am trying to run the tajima module using the following command:
vk tajima 10000 10000 chromosme.vcf.gz > chromosome_td.tsv

Each time I run the command, it runs for a few minutes but quickly consumes a lot of RAM before quitting. Curious if you know how to prevent this?

Thanks!

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