problems with PyFPE

[lroma84]

I have some problems using vk phylo software. I installed all the dependencies and I have this error:
Traceback (most recent call last):
File "/home/luca/miniconda2/bin/vk", line 7, in
from vcfkit.vk import main
File "/home/luca/miniconda2/lib/python2.7/site-packages/vcfkit/vk.py", line 27, in
from utils.vcf import *
File "/home/luca/miniconda2/lib/python2.7/site-packages/vcfkit/utils/vcf.py", line 1, in
from cyvcf2 import VCF as cyvcf2
File "/home/luca/miniconda2/lib/python2.7/cyvcf2/init.py", line 1, in
from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
ImportError: /home/luca/miniconda2/lib/python2.7/cyvcf2/cyvcf2.so: undefined symbol: PyFPE_jbuf
Can you help me?
Thank you very much in advance
Luca

[danielecook]

Can you try:

pip install cython --upgrade
pip install cyvcf2 --upgrade

?

[danielecook]

Did this work for you?