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I would like to use a custom biphasic waveform as the input to the extracellular stimulating electrode (xstim module). I am using a simulation_config.json file that contains a field for "Extracellular_Stim"
The CSV file "485058595_0000_position1.csv" is a modified version of the original one from the directory: "bmtk/examples/bio_components/stimulations/485058595_0000.csv" on the develop branch. It contains the following:
I was unable to find mention of the waveform0.csv file elsewhere in the repository nor on the BMTK website. Do you have an example of the waveform0.csv file?
I examined the files "xstim.py" and "xstim_waveforms.py" in the directory "bmtk\bmtk\simulator\bionet\modules." I saw that the file "xstim_waveforms.py" contains a class "WaveformCustom" that reads a waveform csv file, but I'm unable to understand how it parses the waveform csv file.
As an aside, I have a few related questions:
What are the units in the "amp" value in the waveform field in the simulation_config.json file?
What are the units of "pos_*" in the positions file "485058595_0000_position1.csv"?
I would like to create a 3D figure of a population of neurons and the electrode point. Is there a class that contains the position of the neuron(s) in cartesian coordinates?
The text was updated successfully, but these errors were encountered:
Hello,
I would like to use a custom biphasic waveform as the input to the extracellular stimulating electrode (xstim module). I am using a simulation_config.json file that contains a field for "Extracellular_Stim"
The CSV file "485058595_0000_position1.csv" is a modified version of the original one from the directory: "bmtk/examples/bio_components/stimulations/485058595_0000.csv" on the develop branch. It contains the following:
I was unable to find mention of the waveform0.csv file elsewhere in the repository nor on the BMTK website. Do you have an example of the waveform0.csv file?
I examined the files "xstim.py" and "xstim_waveforms.py" in the directory "bmtk\bmtk\simulator\bionet\modules." I saw that the file "xstim_waveforms.py" contains a class "WaveformCustom" that reads a waveform csv file, but I'm unable to understand how it parses the waveform csv file.
As an aside, I have a few related questions:
The text was updated successfully, but these errors were encountered: