Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

project_celltype_metafile parameter is missing from scpca-nf schema #741

Open
sjspielman opened this issue Apr 16, 2024 · 0 comments
Open

Comments

@sjspielman
Copy link
Member

While testing the pipeline, I noticed that the project_celltype_metafile parameter is missing from the schema json file.

I re-ran nf-core schema build, and it still didn't end up in the json. I wondered if this is because this parameter is only defined in config/profile_ccdl.config. So, I added project_celltype_metafile = "celltype_metadata.tsv" into nextflow.config to test out the theory. Indeed when I next ran nf-core schema build, I was prompted:

✨ Found 'params.project_celltype_metafile' in the pipeline config, but not in the schema. Add to pipeline schema? [y/n]:

It's worth checking if there are other parameters that are in a similar situation and then addressing them consistently.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant