You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
While testing the pipeline, I noticed that the project_celltype_metafile parameter is missing from the schema json file.
I re-ran nf-core schema build, and it still didn't end up in the json. I wondered if this is because this parameter is only defined in config/profile_ccdl.config. So, I added project_celltype_metafile = "celltype_metadata.tsv" into nextflow.config to test out the theory. Indeed when I next ran nf-core schema build, I was prompted:
✨ Found 'params.project_celltype_metafile' in the pipeline config, but not in the schema. Add to pipeline schema? [y/n]:
It's worth checking if there are other parameters that are in a similar situation and then addressing them consistently.
The text was updated successfully, but these errors were encountered:
While testing the pipeline, I noticed that the
project_celltype_metafile
parameter is missing from the schema json file.I re-ran
nf-core schema build
, and it still didn't end up in the json. I wondered if this is because this parameter is only defined inconfig/profile_ccdl.config
. So, I addedproject_celltype_metafile = "celltype_metadata.tsv"
intonextflow.config
to test out the theory. Indeed when I next rannf-core schema build
, I was prompted:It's worth checking if there are other parameters that are in a similar situation and then addressing them consistently.
The text was updated successfully, but these errors were encountered: