Alexander Heyde, David Rohde, Cameron S. McAlpine, Shuang Zhang, Friedrich F. Hoyer, Jeffrey M. Gerold, David Cheek, Yoshiko Iwamoto, Maximilian J. Schloss, Katrien Vandoorne, Oriol Iborra-Egea, Christian Muñoz-Guijosa, Antoni Bayes-Genis, Johannes G. Reiter, Morgan Craig, Filip K. Swirski, Matthias Nahrendorf, Martin A. Nowak, Kamila Naxerova.
Cell. February 25, 2021. DOI: https://doi.org/10.1016/j.cell.2021.01.049
The core contents of this repository, listed below, were respectively prepared in Mathematica version 11.3, Matlab version R2018b, and Python version 3.6.1 in Jupyter.
Heyde-et-al-2021-Mathematica.nb
simulates expected driver clone expansion in a patient and evaluates model sensitivity and can be executed using Mathematica or Wolfram Player.Heyde-et-al-2021-Matlab.m
conducts driver clone simulations at the cohort level and can be executed with Matlab.Heyde-et-al-2021-Python.ipynb
runs the neutral variant process and can be executed at mybinder.org.