Convert mzML to imzML

[tygrad]

What is the command line to convert mzML to imzML

[pchaillo]

I get the exact same problem.

I tried : java -jar jimzMLConverter-2.1.1.jar imzML 20210922_H30.mzML --image-dimensions 33 43

But I get the following error :

C:\Users\Administrator\Documents\PAUL\jimzMLConverter-2.1.1>java -jar jimzMLConv
erter-2.1.1.jar imzML 20210922_H30.mzML --image-dimensions 33 43
Feb 21, 2024 10:47:41 AM com.alanmrace.jimzmlconverter.MainCommand convert
INFO: Converting file 20210922_H30.mzML
Feb 21, 2024 10:47:41 AM com.alanmrace.jimzmlconverter.MainCommand convert
INFO: Detected mzML file
Feb 21, 2024 10:47:41 AM com.alanmrace.jimzmlconverter.MainCommand convert
SEVERE: No coordinates .txt file supplied for the 0th file 20210922_H30.mzML
Exception in thread "main" java.lang.StringIndexOutOfBoundsException: String ind
ex out of range: -1
at java.lang.String.substring(Unknown Source)
at com.alanmrace.jimzmlparser.obo.OBO.(OBO.java:115)
at com.alanmrace.jimzmlparser.obo.OBO.(OBO.java:119)
at com.alanmrace.jimzmlparser.obo.OBO.(OBO.java:119)
at com.alanmrace.jimzmlparser.obo.OBO.loadOntologyFromFile(OBO.java:252)

    at com.alanmrace.jimzmlparser.obo.OBO.getOBO(OBO.java:169)
    at com.alanmrace.jimzmlconverter.ImzMLConverter.getOBOTerm(ImzMLConverte

r.java:209)
at com.alanmrace.jimzmlconverter.ImzMLConverter.(ImzMLConverter.ja
va:95)
at com.alanmrace.jimzmlconverter.MzMLToImzMLConverter.(MzMLToImzML
Converter.java:67)
at com.alanmrace.jimzmlconverter.MainCommand.convert(MainCommand.java:30
2)
at com.alanmrace.jimzmlconverter.MainCommand.main(MainCommand.java:186)