{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":89738953,"defaultBranch":"development","name":"amrex","ownerLogin":"AMReX-Codes","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-04-28T19:37:00.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25084337?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712519197.0","currentOid":""},"activityList":{"items":[{"before":"b029e4f335b09c2992b2e4017db277aa9c293781","after":"d857968968ae2cdf18f39ee50df96529e326ff39","ref":"refs/heads/development","pushedAt":"2024-04-26T17:09:17.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"WeiqunZhang","name":"Weiqun Zhang","path":"/WeiqunZhang","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7862753?s=80&v=4"},"commit":{"message":"Fix compiler warnings in Parser (#3908)","shortMessageHtmlLink":"Fix compiler warnings in Parser (#3908)"}},{"before":"aba9891ec5edbf4c6fbd23fb072662c3bb33223e","after":"b029e4f335b09c2992b2e4017db277aa9c293781","ref":"refs/heads/development","pushedAt":"2024-04-25T21:19:18.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"WeiqunZhang","name":"Weiqun Zhang","path":"/WeiqunZhang","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7862753?s=80&v=4"},"commit":{"message":"Update for ROCm 6.1.0 (#3898)\n\n* A few functions used in Scan have been deprecated in 6.1.0.\r\n\r\n* Remove -Wno-deprecated-declarations from HIP CIs because we no longer\r\nneed it. This will help us catch deprecated functions earlier. The flag\r\nwas added because of atomicNoAdd, which has been handled by `clang\r\ndiagnostic ignore` in the source code.\r\n\r\n* No need for -Wno-gnu-zero-variadic-macro-arguments in HIP CIs anymore.","shortMessageHtmlLink":"Update for ROCm 6.1.0 (#3898)"}},{"before":"b752027c1aebdfb4be339b1e30932b4108286a7a","after":"aba9891ec5edbf4c6fbd23fb072662c3bb33223e","ref":"refs/heads/development","pushedAt":"2024-04-24T21:15:32.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"WeiqunZhang","name":"Weiqun Zhang","path":"/WeiqunZhang","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7862753?s=80&v=4"},"commit":{"message":"clarify comment about EnforcePeriodicity (#3903)\n\nClarify comment on `EnforcePeriodicity` and explain difference between\r\nit and `FillBoundary`","shortMessageHtmlLink":"clarify comment about EnforcePeriodicity (#3903)"}},{"before":"2c9e432ddf8e2b02d0b4f4855ae93cbfe1f58611","after":"b752027c1aebdfb4be339b1e30932b4108286a7a","ref":"refs/heads/development","pushedAt":"2024-04-20T20:48:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"WeiqunZhang","name":"Weiqun Zhang","path":"/WeiqunZhang","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7862753?s=80&v=4"},"commit":{"message":"fix a HIP/Frontier issue (#3902)\n\nthe amrex::single_task(amrex_check_wavefront_size) check causes runtime errors\r\n\r\nthis is the check that Weiqun suggested in #3901 and I've tested that it works on Frontier with Castro","shortMessageHtmlLink":"fix a HIP/Frontier issue (#3902)"}},{"before":"64d2360b209c1e625bfc9a6feeb7501a618f7ed5","after":"2c9e432ddf8e2b02d0b4f4855ae93cbfe1f58611","ref":"refs/heads/development","pushedAt":"2024-04-20T18:32:46.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"WeiqunZhang","name":"Weiqun Zhang","path":"/WeiqunZhang","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7862753?s=80&v=4"},"commit":{"message":"Update HIP CIs for rocm 6.1.0 (#3897)\n\nWe can no longer use `-fno-operator-names` because rocm 6.1.0 uses\r\noperator names such as `or` in macros.","shortMessageHtmlLink":"Update HIP CIs for rocm 6.1.0 (#3897)"}},{"before":"96f6d669d1bb2622346663a2b7cb58624866fcc3","after":"64d2360b209c1e625bfc9a6feeb7501a618f7ed5","ref":"refs/heads/development","pushedAt":"2024-04-18T03:35:00.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ax3l","name":"Axel Huebl","path":"/ax3l","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1353258?s=80&v=4"},"commit":{"message":"Set AMD wavefront size according to AMReX_AMD_ARCH (#3881)\n\nAt compile time set it to 64 except for gfx10*.\r\n\r\nClose #3792","shortMessageHtmlLink":"Set AMD wavefront size according to AMReX_AMD_ARCH (#3881)"}},{"before":"2780fa8147bd7e992e77a703db93fe36e7458362","after":"96f6d669d1bb2622346663a2b7cb58624866fcc3","ref":"refs/heads/development","pushedAt":"2024-04-17T02:11:12.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"atmyers","name":"Andrew Myers","path":"/atmyers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4329158?s=80&v=4"},"commit":{"message":"Fix offset in recv buffer of single precision particle communication (#3896)\n\nA similar bug was fixed in #3758 for the particle send buffer. But we\r\ndid not notice the issue in the receive buffer at the time. The offset\r\nfor the `i`th buffer might be aligned for the `i`th buffer's\r\ncommunication data type, not the previous buffer.\r\n\r\nThe reason the bug only appears for large single precision runs is\r\nbecause for double precision the particle size is aligned with the size\r\nof unsigned long long used in communication, whereas for single\r\nprecision this is not the case.","shortMessageHtmlLink":"Fix offset in recv buffer of single precision particle communication (#…"}},{"before":"6fc92e3afebdae95d836f68395b6643ecb4d2531","after":"2780fa8147bd7e992e77a703db93fe36e7458362","ref":"refs/heads/development","pushedAt":"2024-04-16T17:44:53.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ax3l","name":"Axel Huebl","path":"/ax3l","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1353258?s=80&v=4"},"commit":{"message":"Fix Assertion (#3894)\n\nThe comparison in the assertion should be element-wise not\r\nlexicographic.","shortMessageHtmlLink":"Fix Assertion (#3894)"}},{"before":"e293ff68519961dd77a3e5c8a839c619e3be1803","after":"6fc92e3afebdae95d836f68395b6643ecb4d2531","ref":"refs/heads/development","pushedAt":"2024-04-16T15:43:33.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"WeiqunZhang","name":"Weiqun Zhang","path":"/WeiqunZhang","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7862753?s=80&v=4"},"commit":{"message":"TinyProfiler: shorten output into \"Other\" section (#3885)\n\n## Summary\r\n\r\nIn this PR, an option is added to shorten the output from TinyProfiler\r\nat the end of a simulation.\r\n```\r\ntiny_profiler.print_threshold = 1.\r\n```\r\nWith the current approach, `tiny_profiler.print_threshold` specifies the\r\nmaximum inclusive runtime that the \"Other\" section can take in percent\r\nrelative to the total runtime. The default value is 1, which results in\r\nat least 99% of the total inclusive and exclusive time still being\r\nprofiled outside \"Other\".\r\nIn the exclusive section, the same functions are combined into \"Other\"\r\nas in the inclusive section. This has the effect that a given function\r\nwill either show up in both or neither of the sections. But this also\r\nmeans that functions such as \"main()\" with a large inclusive but short\r\nexclusive runtime will still show up in the exclusive section, even\r\nthough functions with longer exclusive runtime might have been put into\r\n\"Other\".\r\n\r\n## Additional background\r\n\r\nHiPACE++ TinyProfiler output with `tiny_profiler.print_threshold = 1`:\r\n```\r\nTinyProfiler total time across processes [min...avg...max]: 19.95 ... 20.37 ... 20.7\r\n\r\n--------------------------------------------------------------------------------------------------\r\nName NCalls Excl. Min Excl. Avg Excl. Max Max %\r\n--------------------------------------------------------------------------------------------------\r\nhpmg::MultiGrid::solve1() 1000 6.532 6.542 6.57 31.73%\r\nAnyDST::Execute() 6000 3.853 3.869 3.892 18.80%\r\nAdvanceBeamParticlesSlice() 1000 2.7 2.716 2.736 13.21%\r\nExplicitDeposition() 1000 2.246 2.261 2.277 11.00%\r\nAdvancePlasmaParticles() 1000 1.249 1.255 1.271 6.14%\r\nDepositCurrent_PlasmaParticleContainer() 1001 0.9996 1.006 1.014 4.90%\r\nMultiBuffer::get_data() 1000 0.0008554 0.3973 0.9006 4.35%\r\nFFTPoissonSolverDirichlet::SolvePoissonEquation() 3000 0.4731 0.4752 0.4797 2.32%\r\nFields::InitializeSlices() 1000 0.4426 0.4504 0.4597 2.22%\r\nFields::ShiftSlices() 1000 0.2872 0.3431 0.4128 1.99%\r\nFields::SolvePoissonPsiExmByEypBxEzBz() 1000 0.3722 0.3751 0.3783 1.83%\r\nHipace::InitializeSxSyWithBeam() 1000 0.2212 0.2224 0.2236 1.08%\r\nFillBoundary_nowait() 4000 0.1168 0.1202 0.124 0.60%\r\nFields::AddRhoIons() 1000 0.09308 0.09395 0.09525 0.46%\r\nMultiBuffer::put_data() 1000 0.004975 0.05095 0.06177 0.30%\r\nAdaptiveTimeStep::GatherMinUzSlice() 1000 0.02971 0.03274 0.05097 0.25%\r\nDepositCurrentSlice_BeamParticleContainer() 2000 0.03985 0.04177 0.04291 0.21%\r\nHipace::SolveOneSlice() 1000 0.007764 0.008161 0.008495 0.04%\r\nHipace::ExplicitMGSolveBxBy() 1000 0.003842 0.003985 0.004245 0.02%\r\nHipace::Evolve() 1 0.0008552 0.001817 0.00225 0.01%\r\nFabArray::FillBoundary() 4000 0.001446 0.001505 0.001561 0.01%\r\nmain() 1 0.001071 0.001176 0.001244 0.01%\r\nOther 11832 0.08133 0.1007 0.1464 0.71%\r\n--------------------------------------------------------------------------------------------------\r\n\r\n--------------------------------------------------------------------------------------------------\r\nName NCalls Incl. Min Incl. Avg Incl. Max Max %\r\n--------------------------------------------------------------------------------------------------\r\nmain() 1 19.95 20.37 20.7 100.00%\r\nHipace::Evolve() 1 19.91 20.33 20.66 99.80%\r\nHipace::SolveOneSlice() 1000 19.88 20.31 20.64 99.69%\r\nHipace::ExplicitMGSolveBxBy() 1000 6.536 6.546 6.574 31.75%\r\nhpmg::MultiGrid::solve1() 1000 6.532 6.542 6.57 31.73%\r\nFields::SolvePoissonPsiExmByEypBxEzBz() 1000 4.766 4.784 4.815 23.25%\r\nFFTPoissonSolverDirichlet::SolvePoissonEquation() 3000 4.326 4.344 4.372 21.11%\r\nAnyDST::Execute() 6000 3.853 3.869 3.892 18.80%\r\nAdvanceBeamParticlesSlice() 1000 2.7 2.716 2.736 13.21%\r\nExplicitDeposition() 1000 2.246 2.261 2.277 11.00%\r\nAdvancePlasmaParticles() 1000 1.249 1.255 1.271 6.14%\r\nDepositCurrent_PlasmaParticleContainer() 1001 0.9996 1.006 1.014 4.90%\r\nMultiBuffer::get_data() 1000 0.03689 0.4028 0.9019 4.36%\r\nFields::InitializeSlices() 1000 0.4426 0.4504 0.4597 2.22%\r\nFields::ShiftSlices() 1000 0.2872 0.3431 0.4128 1.99%\r\nHipace::InitializeSxSyWithBeam() 1000 0.2782 0.281 0.2849 1.38%\r\nFabArray::FillBoundary() 4000 0.1199 0.1233 0.1271 0.61%\r\nFillBoundary_nowait() 4000 0.1176 0.121 0.1248 0.60%\r\nFields::AddRhoIons() 1000 0.09308 0.09395 0.09525 0.46%\r\nMultiBuffer::put_data() 1000 0.004975 0.05116 0.06203 0.30%\r\nAdaptiveTimeStep::GatherMinUzSlice() 1000 0.02971 0.03274 0.05097 0.25%\r\nDepositCurrentSlice_BeamParticleContainer() 2000 0.03985 0.04177 0.04291 0.21%\r\nOther 11832 0.1359 0.1483 0.1925 0.93%\r\n--------------------------------------------------------------------------------------------------\r\n```\r\n\r\nHiPACE++ TinyProfiler output with `tiny_profiler.print_threshold = 0`\r\n(off):\r\n```\r\nTinyProfiler total time across processes [min...avg...max]: 20.17 ... 20.66 ... 20.98\r\n\r\n--------------------------------------------------------------------------------------------------\r\nName NCalls Excl. Min Excl. Avg Excl. Max Max %\r\n--------------------------------------------------------------------------------------------------\r\nhpmg::MultiGrid::solve1() 1000 6.531 6.548 6.58 31.37%\r\nAnyDST::Execute() 6000 3.855 3.881 3.942 18.79%\r\nAdvanceBeamParticlesSlice() 1000 2.702 2.718 2.747 13.09%\r\nExplicitDeposition() 1000 2.244 2.262 2.282 10.88%\r\nAdvancePlasmaParticles() 1000 1.251 1.269 1.371 6.53%\r\nMultiBuffer::get_data() 1000 0.0008761 0.6194 1.14 5.43%\r\nDepositCurrent_PlasmaParticleContainer() 1001 1.004 1.01 1.02 4.86%\r\nFFTPoissonSolverDirichlet::SolvePoissonEquation() 3000 0.4723 0.474 0.477 2.27%\r\nFields::InitializeSlices() 1000 0.4447 0.4534 0.4741 2.26%\r\nFields::ShiftSlices() 1000 0.288 0.3436 0.4096 1.95%\r\nFields::SolvePoissonPsiExmByEypBxEzBz() 1000 0.3727 0.3747 0.3758 1.79%\r\nHipace::InitializeSxSyWithBeam() 1000 0.2198 0.2219 0.2233 1.06%\r\nFillBoundary_nowait() 4000 0.1168 0.1207 0.1259 0.60%\r\nFields::AddRhoIons() 1000 0.09291 0.09412 0.09528 0.45%\r\nMultiBuffer::put_data() 1000 0.005048 0.05104 0.06124 0.29%\r\nAdaptiveTimeStep::GatherMinUzSlice() 1000 0.02938 0.03298 0.04933 0.24%\r\nDepositCurrentSlice_BeamParticleContainer() 2000 0.04035 0.04223 0.04532 0.22%\r\nshiftSlippedParticles() 678 0.03493 0.03694 0.03845 0.18%\r\nBeamParticleContainer::InitBeamFixedWeightSlice() 125 0 0.004304 0.03443 0.16%\r\nHipace::InitData() 1 0.006485 0.02631 0.0304 0.14%\r\nPlasmaParticleContainer::InitParticles() 1 0.02805 0.02865 0.02917 0.14%\r\nBeamParticleContainer::InitBeamFixedWeight3D() 1 9.41e-07 0.002142 0.01713 0.08%\r\nHipace::SolveOneSlice() 1000 0.007763 0.00821 0.00885 0.04%\r\nFabArray::setVal() 4 0.007318 0.007621 0.008111 0.04%\r\nAnyDST::CreatePlan() 1 0.005389 0.006022 0.006552 0.03%\r\nFields::AllocData() 1 0.005303 0.005756 0.00611 0.03%\r\nsortBeamParticlesByBox() 0 0 0.0005877 0.004702 0.02%\r\nHipace::ExplicitMGSolveBxBy() 1000 0.003881 0.003983 0.004134 0.02%\r\nBeamParticleContainer::resize() 3014 0.002165 0.002377 0.0025 0.01%\r\nHipace::Evolve() 1 0.0008157 0.001788 0.002294 0.01%\r\nFabArray::FillBoundary() 4000 0.001378 0.001443 0.001546 0.01%\r\nmain() 1 0.00106 0.001194 0.001266 0.01%\r\nFillBoundary_finish() 4000 0.0007684 0.0008594 0.0009376 0.00%\r\nFabArrayBase::getFB() 4000 0.000709 0.0007543 0.0008294 0.00%\r\nAdaptiveTimeStep::CalculateFromDensity() 1 6.339e-05 7.22e-05 0.0001312 0.00%\r\nFabArrayBase::FB::FB() 1 3.079e-05 3.577e-05 3.732e-05 0.00%\r\nAdaptiveTimeStep::CalculateFromMinUz() 1 2.495e-06 3.89e-06 1.072e-05 0.00%\r\nParticleContainer::clearParticles() 1 3.4e-07 4.009e-07 4.81e-07 0.00%\r\n--------------------------------------------------------------------------------------------------\r\n\r\n--------------------------------------------------------------------------------------------------\r\nName NCalls Incl. Min Incl. Avg Incl. Max Max %\r\n--------------------------------------------------------------------------------------------------\r\nmain() 1 20.17 20.66 20.98 100.00%\r\nHipace::Evolve() 1 20.12 20.61 20.93 99.77%\r\nHipace::SolveOneSlice() 1000 20.07 20.56 20.89 99.57%\r\nHipace::ExplicitMGSolveBxBy() 1000 6.535 6.552 6.584 31.38%\r\nhpmg::MultiGrid::solve1() 1000 6.531 6.548 6.58 31.37%\r\nFields::SolvePoissonPsiExmByEypBxEzBz() 1000 4.768 4.794 4.86 23.17%\r\nFFTPoissonSolverDirichlet::SolvePoissonEquation() 3000 4.327 4.355 4.419 21.06%\r\nAnyDST::Execute() 6000 3.855 3.881 3.942 18.79%\r\nAdvanceBeamParticlesSlice() 1000 2.702 2.718 2.747 13.09%\r\nExplicitDeposition() 1000 2.244 2.262 2.282 10.88%\r\nAdvancePlasmaParticles() 1000 1.251 1.269 1.371 6.53%\r\nMultiBuffer::get_data() 1000 0.0366 0.6249 1.141 5.44%\r\nDepositCurrent_PlasmaParticleContainer() 1001 1.004 1.01 1.02 4.86%\r\nFields::InitializeSlices() 1000 0.4447 0.4534 0.4741 2.26%\r\nFields::ShiftSlices() 1000 0.288 0.3436 0.4096 1.95%\r\nHipace::InitializeSxSyWithBeam() 1000 0.2765 0.281 0.2851 1.36%\r\nFabArray::FillBoundary() 4000 0.1198 0.1238 0.1291 0.62%\r\nFillBoundary_nowait() 4000 0.1175 0.1215 0.1266 0.60%\r\nFields::AddRhoIons() 1000 0.09291 0.09412 0.09528 0.45%\r\nMultiBuffer::put_data() 1000 0.005048 0.05126 0.06151 0.29%\r\nAdaptiveTimeStep::GatherMinUzSlice() 1000 0.02938 0.03298 0.04933 0.24%\r\nHipace::InitData() 1 0.04745 0.04759 0.0477 0.23%\r\nDepositCurrentSlice_BeamParticleContainer() 2000 0.04035 0.04223 0.04532 0.22%\r\nshiftSlippedParticles() 678 0.03558 0.03747 0.03907 0.19%\r\nBeamParticleContainer::InitBeamFixedWeightSlice() 125 0 0.004465 0.03572 0.17%\r\nPlasmaParticleContainer::InitParticles() 1 0.02805 0.02866 0.02918 0.14%\r\nFields::AllocData() 1 0.01716 0.01854 0.01907 0.09%\r\nBeamParticleContainer::InitBeamFixedWeight3D() 1 9.41e-07 0.002142 0.01713 0.08%\r\nFabArray::setVal() 4 0.007318 0.007621 0.008111 0.04%\r\nAnyDST::CreatePlan() 1 0.005389 0.006022 0.006552 0.03%\r\nsortBeamParticlesByBox() 0 0 0.0005877 0.004702 0.02%\r\nBeamParticleContainer::resize() 3014 0.002165 0.002377 0.0025 0.01%\r\nFillBoundary_finish() 4000 0.0007684 0.0008594 0.0009376 0.00%\r\nFabArrayBase::getFB() 4000 0.0007451 0.00079 0.0008653 0.00%\r\nAdaptiveTimeStep::CalculateFromDensity() 1 6.339e-05 7.22e-05 0.0001312 0.00%\r\nFabArrayBase::FB::FB() 1 3.079e-05 3.577e-05 3.732e-05 0.00%\r\nAdaptiveTimeStep::CalculateFromMinUz() 1 2.495e-06 3.89e-06 1.072e-05 0.00%\r\nParticleContainer::clearParticles() 1 3.4e-07 4.009e-07 4.81e-07 0.00%\r\n--------------------------------------------------------------------------------------------------\r\n```","shortMessageHtmlLink":"TinyProfiler: shorten output into \"Other\" section 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