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pypairix to capture pairs that have specific readIDs #69

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LIZW2019 opened this issue Aug 6, 2021 · 0 comments
Open

pypairix to capture pairs that have specific readIDs #69

LIZW2019 opened this issue Aug 6, 2021 · 0 comments

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@LIZW2019
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LIZW2019 commented Aug 6, 2021

Hello,

I would like to know whether pypairix can be used to capture readID related pairs quickly.
Just like:

import pypairix
readID_list = ['read1','read2,'read3'] # string or regular expression
tb = pypairix.open(pair_file)
tb.query2D(readID = readID_list)

It would helps a lot if pypairix would prefrom like this!
(or pandas would just work the same, without much help from the index?)

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