Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,
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Updated
Mar 24, 2018 - R
Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,
The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
A tutorial for reproducting outlier tests based on temporal differentiation
Predicción de patogenicidad en polimorfismos de un sólo nucleótido usando Aprendizaje Automático
Custom command line utility tools to manipulate vcf files
Genomic signatures of the Polynesian rat retrace the Austronesian expansion
A collection of scripts documenting the parameter settings used to apply variant discovery to the exploration of Duodenal Polyposis.
Facilitates post-processing of SNP pipeline outputs
Analyzing genetic variation and selection in three-spined stickleback populations, these projects apply statistical and evolutionary genomic analyses to understand environmental influences and identify outlier SNPs, highlighting the interplay between natural selection and population differentiation.
Developed for personal use in bachelor thesis on SNPs analysis
The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
A program for pulling flanking sequences from a reference genome for a SNP
Pipeline which make phylogeny with sequence of different sample
MutFold | Human breast cancer associated mutant protein structure prediction and alignment application
A nextflow pipeline to run phylogenetic analyses using SNPs
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