Pipeline for genotype phasing using SHAPEIT4
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Updated
Mar 24, 2023 - Nextflow
Pipeline for genotype phasing using SHAPEIT4
gwas workflow from raw intensity data to in-silico functional mapping
Step-by-step guide to different types of phasing and testing their accuracy
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
psychedelic visual synthesizer color-organ style
Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
scripts associated with yam genome assembly
A pipeline to select the best K (number of clusters) for fastPHASE imputation and phasing.
Microsatellite genotyping
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
Easy, fast, configurable version of phasor. Perfect for students who what to start with analyzing Coherent X-ray Diffraction Data.
A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.
Autoencoders for genomic data compression, classification, imputation, phasing and simulation.
haplotype estimation, custom panel creation, and genotype imputation
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
Scripts to automate the phasing with several tools
A phasing and imputation pipeline for NGS data
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