Variant calling using a pan-genomic reference, version 3
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Updated
Jun 12, 2024 - C++
Variant calling using a pan-genomic reference, version 3
Rust crates for working with Workflow Description Language (WDL) documents.
Infectious Disease Sequencing Platform
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Java utilities for Bioinformatics
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
SPAdes Genome Assembler
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
Analysis of CRISPR libraries
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Mycobacterial pipeline
A web platform providing accessibility to HIV NGS pipelines - Template Consensus Sequence, Drug Resistance, Outgrowth Virus Dating
用于bioos的大规模数据分析
NGLess: NGS with less work
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
A Similarity-Guided Alignment Algorithm
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials
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