Code and report for a small tool to optimize 16S sequencing pipelines
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Updated
Jun 13, 2014 - C
Code and report for a small tool to optimize 16S sequencing pipelines
VCF Neo4j import tool (WebSocket)
NanoString classifier based on NGS training set
BIO634 Next-Generation Sequencing 2 – Transcriptomes, Variant Calling and Biological Interpretation
Dense multiplexed PacBio sequencing for synthetic biology
Parallel / multithreading / multiple threads version of Prinseq
NanostrIng MB cLassifiEr
eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data
Neat AWS config, workflow, pipline
High performance NGS read trimmer
Validate SV with Split-Reads
Removes PCR duplication from amplicon datasets
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Illumina pipeline for 16S sequencing, completed in Python.
Copy number estimation of highly duplicated sequences
Coverage analysis of the data from the targeted-sequencing experiment of Hummingbirds (data from the paper Fonseca et al. 2018)
One-stop shop for one-click NGS analyses from the command-line
Dense multiplexed PacBio sequencing for synthetic biology
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