Simple bacterial assembly and annotation pipeline
-
Updated
Jun 12, 2024 - Nextflow
Simple bacterial assembly and annotation pipeline
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedor, Pryszcz et al., BioRxiv 2023)
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
Snakemake pipeline to analyze retrotransposable element 'omics data.
NanoASV official repo
Automated data mangement for Oxford Nanopore DNA sequencing instruments
😎 This repository contains scripts that I wrote for data analysis and visualization.
Assembly and binning of metagenomes
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
Lightweight bioinformatics pipeline for microbial genome recovery
Anglerfish - Nanopore reads from Illumina libraries
CLI tool for processing single locus SMF data
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
A PyTorch Basecaller for Oxford Nanopore Reads
Add a description, image, and links to the nanopore topic page so that developers can more easily learn about it.
To associate your repository with the nanopore topic, visit your repo's landing page and select "manage topics."