A short tandem repeat (STR) genotyping and analysis toolkit for long reads
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Updated
Jun 13, 2024 - Python
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Long read production pipelines
Mitochondrial Long-read Iterative Assembly
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
A scalable variant calling and benchmarking framework supporting both short and long reads.
Graph-based assembly phasing
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Fast and accurate de novo assembler for long reads
ClairS - a deep-learning method for long-read somatic small variant calling
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Evolutionary genomics of chromosomal inversions in Atlantic herring
Tool to analyze chromatin accessibility with long read sequencing technologies
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Clair3-Trio: variant calling in trio using Nanopore long-reads
Tandem repeat expansion detection or genotyping from long-read alignments
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