indels
Here are 42 public repositories matching this topic...
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)
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Nov 16, 2017 - C
Barton and Zeng (2018) - Pipeline for testing anavar with simulated data.
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Apr 5, 2018 - Python
Fast and accurate single sample SNV caller
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May 2, 2018 - C++
Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
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Oct 30, 2018 - Python
gappy extracts splids (split-inducing indels) from multiple sequence alignments.
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Nov 30, 2018 - C++
A method for variant graph genotyping based on exact alignment of k-mers
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Apr 1, 2019 - C++
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
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Apr 8, 2019 - Python
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
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Dec 26, 2023 - Perl
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
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May 27, 2020 - Python
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
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Oct 21, 2020 - Python
MitoMut is a tool to call mitochondrial deletions from next generation sequencing (NGS) data
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Oct 21, 2020 - Python
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
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Jun 2, 2021 - R
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Jun 22, 2021 - Python
NGS data analysis scripts for HBV elimination research group
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Jun 23, 2021 - Python
gappy2 is the successor of gappy v1
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Jul 6, 2021 - Python
Strelka2 germline and somatic small variant caller
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Dec 29, 2021 - C++
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