Bayesian haplotype-based mutation calling
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Updated
Aug 12, 2023 - C++
Bayesian haplotype-based mutation calling
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
A python parser to simplify and build the VCF (Variant Call Format).
Minor Variant Calling and Phasing Tools
ClairS - a deep-learning method for long-read somatic small variant calling
Long sequencing reads classifier
A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.
An algorithm for recovering haplotypes from metagenomes
An efficient genetic data imputation pipeline
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
Construct gene haplotype with VCF format files and snpEff annotation.
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Intersect multiple VCF files with haplotype awareness
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
Proteogenomics database-generation tool for protein haplotypes and variants
Split a BAM file by haplotype support
Haplotype Fixation Index for crop populations with homozygous nature, such as rice
Create a set of reference-guided multiple-aligned haplotypes or founder sequences from a variant call file and a reference sequence.
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