zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
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Updated
Jun 13, 2024 - Python
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform
Bystro genetic analysis (annotation, filtering, statistics)
Grammar of Scalable Linked Interactive Nucleotide Graphics
Official code repository for GATK versions 4 and up
Infectious Disease Sequencing Platform
Extensible specification for representing and uniquely identifying biological sequence variation
A structural variation pipeline for short-read sequencing
Here you'll find information about my background, expertise, and professional interests. As a physician and bioinformatic programmer, I'm passionate about leveraging my diverse skill set to make meaningful contributions to healthcare, research, and technology.
An open-access bioinformatics text
First steps to Bioinformatics by using Biopython tutorial documentation
a versatile toolkit for processing and analyzing diverse types of sequence data
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
The GenePattern Server web application
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