A containerized nextflow pipeline designed to annotate prokaryote genomes.
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Updated
Mar 13, 2022 - Nextflow
A containerized nextflow pipeline designed to annotate prokaryote genomes.
Empirical intron annotation for Loxodes magnus genome assembly
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Arche: a functional-optimized annotator for microbial meta(genomes)
analyzer for phytozome gff files and pacid for genes.
ruby gem for analyzing miniprot protein to genome alignments.
genome annotation length calculations.
Linked Data Platform for Animal Breeding & Genomics
Hands-on Introduction to Data Analysis for Genomics and Transcriptomics
Retroviral Integration Pattern Analysis Tool
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines; I was a developer on this project at The Institute for Genomic Research/J. Craig Venter Institute from 2005 to 2008.
Scripts for Hill et al. (2023) doi:10.1093/gbe/evad038 🌿
De novo assembly of the red legged patridge (Alectoris rufa) genome
The genome of the contractile demosponge Tethya wilhelma
🐳 Apollo 2.X Docker Image
Website on genome annotation
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
a miniprot alignments analyzer for protein alignments to draft genomes.
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