Companion repository to the article: "Comparative whole-genome approach to identify bacterial traits for microbial interactions"
-
Updated
Mar 16, 2022 - R
Companion repository to the article: "Comparative whole-genome approach to identify bacterial traits for microbial interactions"
A containerized nextflow pipeline designed to annotate prokaryote genomes.
Empirical intron annotation for Loxodes magnus genome assembly
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Arche: a functional-optimized annotator for microbial meta(genomes)
Scripts and notes related to the manuscript: Stuart KC & Edwards RJ et al. 2022. Transcript- and annotation-guided genome assembly of the European starling. Molecular Ecology Resources, doi.org/10.1101/2021.04.07.438753. † joint first author
analyzer for phytozome gff files and pacid for genes.
ruby gem for analyzing miniprot protein to genome alignments.
Viral genome assemble and characterisation
genome annotation length calculations.
tair id to pubmed links for articls, genes, annotations, locus tag.
Linked Data Platform for Animal Breeding & Genomics
Backup an apollo instance to a git repository
Aphrocallistes vastus genome
A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.
🐳 Apollo 2.X Docker Image
All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
a miniprot alignments analyzer for protein alignments to draft genomes.
Add a description, image, and links to the genome-annotation topic page so that developers can more easily learn about it.
To associate your repository with the genome-annotation topic, visit your repo's landing page and select "manage topics."