Infectious Disease Sequencing Platform
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Updated
May 31, 2024 - TypeScript
Infectious Disease Sequencing Platform
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
Reconstruction and analysis of viral and host genomes at multi-organ level
An organised catalog of endogenous viral element (EVE) sequences identified via database-integrated genome screening (DIGS).
Detect iSNV and construct whole viral genomes from metagenomic samples
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
Database of herpesvirus antiviral resistance mutations
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
A web tool for recombination events analysis in viral genomes. Django based version of recan
Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)
genetic distance plotting for recombination events analysis
hmmcluster - Hidden Markov Model clustering of nucleotide sequences. O Charles & R Goldstein.
Drug Resistance Genotyping of antiviral treated Herpesviruses
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Unpivoted and cleaned data sets on the COVID-19 pandemic
Automated Genomics Application for Variant Exploration (AGAVE)
Dr. Buqing Yi
workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.
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