Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
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Updated
May 31, 2024 - Python
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
A modular annotation tool for genomic variants
PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing
MyVariant.info: A BioThings API for human variant annotations
using all the bits for echt rapid variant annotation and filtering
A novel management, annotation, and machine learning framework for analyzing cancer mutations
Generic human DNA variant annotation pipeline
A Snakemake workflow for variant calling using GATK4 best practices
This repository contains an analysis pipeline developed to characterize WGS output
WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication
CADD-SV – a framework to score the effect of structural variants
A Python GUI VCF viewer for SNP, indels, and TE.
A command line tool for predicting gene expression using genotypic data
A relational database stores per sample based sequencing data.
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Genomic VCF to tab-separated values
visual analysis of your VCF files
Clinical machine-learning based interpreter of germline mutations.
A phenotype-based tool for variant prioritization in WES and WGS data
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
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