DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
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Updated
Jul 14, 2022 - Python
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
Python wrapper and web-server for Ensembl VEP
WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication
A chamada de variantes envolve a identificação de polimorfismos de nucleotídeo único (SNPs) e pequenas inserções e deleções (indels) em dados de Sequenciamento de Nova Geração (NGS). Nesta pipeline descrevo a detecção de SNP para identificação de possíveis alterações de aminoácidos em proteínas virais.
interactive variant tables for easy filtering
neural networks to score PubMed search results for similarity to evidence abstracts from ClinVar or CIViC
A command line tool for predicting gene expression using genotypic data
This is a public repo to introduce Omni and collect issues and feedback.
Customized vcf_melt script from pyvcf. Handles snpEff-annotated vcf files
Repository for miscellaneous bioinformatics scripts that may be useful to others.
PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
An empirical variant annotation and data evaluation pipeline.
A relational database stores per sample based sequencing data.
Variant annotation and filtration server ALAPY Genome Explorer
This repository contains an analysis pipeline developed to characterize WGS output
A Snakemake workflow for variant calling using GATK4 best practices
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
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