ncbi
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`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports
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May 31, 2024 - Rust
ClinVar Submission API Made Easy
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May 31, 2024 - Python
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
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May 30, 2024 - Jupyter Notebook
Bot that toots when NCBI updates their taxonomy database
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May 28, 2024 - Python
multiprocessed ncbi edirect
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May 23, 2024 - Python
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
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May 23, 2024 - Python
Python Clinical Variant Tools This repository hosts Python scripts designed to streamline the retrieval of clinical variant information from authoritative sources such as ClinVar and DisGeNET. These tools facilitate efficient data extraction and analysis for researchers and professionals in the field of genetics and genomics.
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May 22, 2024 - Python
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
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May 13, 2024 - Python
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
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May 10, 2024 - Python
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
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Apr 18, 2024 - HTML
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
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Apr 16, 2024 - Python
This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.
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Apr 28, 2024 - Perl
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