CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

Shiny webapp for epiworldR package

[Under active development] Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

[Under active development] - A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

A SEIRS-NIMFA compartmental epidemiological model implementation adapted for the analysis of IoT network malware propagation

Code for reproducing the results presented in 'When should lockdown be implemented? Devising cost-effective strategies for managing epidemics amid vaccine uncertainty' (N.J. Doyle, F. Cumming, R.N. Thompson, M.J. Tildesley).

Library for epidemics on hypergraphs

Compartmental Epidemic Models in Python

Epidemic simulation for MATSim

A crude simulation of an epidemic in Python with pygame visualization

Spreading Processes on Networks

Continuous-time noisy voter model

Matlab Simulator of Continuous-time Multi-type Branching Processes in Random Environment. (UPDATE: includes examples for modelling the coronavirus epidemics (COVID-19, SARS-CoV-2)))

A repository to store all of my epidemiological predictive models, including a basic SIR model and it's modifications. This repository also has some other fun models, including the SIInZD model for zombie outbreaks, and a model to predict the population growth of the Diclonious race from Elfen Lied. These models are written in C++ and use OpenMP.

Designed and implemented an epidemiological model in C++ using stochastic modelling. Such models generalize classical SEIR ones that are only defined via ODEs, without considering spatial relations.

Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.

Vectored GPU based compartmental simulations. Easy to use. With some ABC (Approximate Bayesian Computation) utils

Trabajo de Fin de Grado de Física 2022

Simulateur d'épidémie 2D

This repository hosts a Python-based Infection Model Simulator capable of simulating and visualizing the dynamics of various infection models: SIR, SIRD, and SIER. The models allow tracking the spread and impact of infections considering different parameters.