Data intensive science for everyone.
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Updated
Jun 6, 2024 - Python
Data intensive science for everyone.
UGENE is free open-source cross-platform bioinformatics software
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
tools for working with genome variation graphs
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
Official git repository for Biopython (originally converted from CVS)
ViraMiner-CB: Deep Learning Architecture Inspired from GoogleLeNet for Robust Identification of Viral DNA Sequences.
Official code repository for GATK versions 4 and up
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
RIsearch: a tool for large-scale RNA–RNA, RNA-DNA, and DNA-DNA interaction prediction
dna protein prediction using transformer. second version of engima-1.5b
A structurally-accurate, modular, and articulating B-DNA model kit optimized for desktop FDM 3D-printers
Tool for fully-automated inference of species trees from raw genome assemblies
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
Program takes in a string of DNA, and converts it to a protein chain.
Get standard bioinformatics stats, and more, for your DNA or RNA sequence.
QSLib is a package for interacting with Applied Biosystems' QuantStudio qPCR machines, intended for non-qPCR uses, such as DNA computing and molecular programming systems.
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