Bioinformatics
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Here are 9,254 public repositories matching this topic...
Conda recipes for the bioconda channel.
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Jun 6, 2024 - Shell
Repository for an automated microscopy image analysis pipeline (CryptoClassifier), using ImageJ.
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Jun 6, 2024 - R
Yet another redundant workflow engine
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Jun 6, 2024 - Python
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
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Jun 6, 2024 - Python
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
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Jun 6, 2024 - Python
Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7
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Jun 6, 2024 - Python
An instructional/experiential book using R and Bioconductor.
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Jun 6, 2024 - TeX
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
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Jun 6, 2024 - Python
Annotated sequence data
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Jun 6, 2024 - Jupyter Notebook
Code repository for all scripts used to collect data, perform statistics and create figures for the paper "GC content across insect genomes: phylogenetic patterns, causes and consequences"
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Jun 6, 2024 - Python
Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.
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Jun 6, 2024 - C++
Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.
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Jun 6, 2024 - MATLAB
Pipeline for inference of Granger-causal relations in molecular systems to study actin regulation in lamellipodia
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Jun 6, 2024 - MATLAB
u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.
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Jun 6, 2024 - MATLAB
Python code used to detect and track blebs frame-to-frame, and to analyze bleb size statistics before and after photoactivation.
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Jun 6, 2024 - Python
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
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Jun 6, 2024 - Python