{"payload":{"pageCount":8,"repositories":[{"type":"Public","name":"phenopacket-store","owner":"monarch-initiative","isFork":false,"description":"Collection of phenopackets","allTopics":["ga4gh","hpo","phenopackets"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":15,"starsCount":10,"forksCount":4,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,14,4,6,15,2,4,0,0,0,0,12,2,14,0,17,9,16,0,1,9,1,3,2,14,26,22,8,0,0,0,12,7,1,3,39,14,5,13,18,14,28,66,15,6,49,25,38,48,15,19,17],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T06:35:46.292Z"}},{"type":"Public template","name":"mondo","owner":"monarch-initiative","isFork":false,"description":"Mondo Disease Ontology","allTopics":["owl","ontology","disease","monarchinitiative","disease-classification","obofoundry","mondo"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":28,"issueCount":356,"starsCount":218,"forksCount":49,"license":"Creative Commons Attribution 4.0 International","participation":[14,18,12,21,5,4,5,25,18,16,11,12,9,13,10,21,9,7,29,10,3,20,11,8,7,20,50,22,18,1,11,15,8,20,13,10,14,19,12,14,11,26,26,19,17,8,6,21,10,10,7,13],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T02:00:24.099Z"}},{"type":"Public","name":"mondo-ingest","owner":"monarch-initiative","isFork":false,"description":"Coordinating the mondo-ingest with external sources","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":12,"issueCount":188,"starsCount":6,"forksCount":2,"license":null,"participation":[26,30,9,2,10,1,5,4,1,0,1,18,1,1,8,0,1,1,0,0,0,0,4,0,6,8,0,0,0,0,0,4,3,17,25,29,6,17,1,10,7,12,4,4,8,4,8,5,0,0,1,4],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T00:35:20.194Z"}},{"type":"Public","name":"curate-gpt","owner":"monarch-initiative","isFork":false,"description":"LLM-driven curation assist tool (pre-alpha)","allTopics":["ai","gpt","ontologies","curation","biocuration","monarchinitiative","obofoundry","ontology-tools","llm","ontogpt"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":5,"issueCount":17,"starsCount":44,"forksCount":9,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,7,4,2,4,6,0,1,7,2,0,0,1,1,0,1,2,1,7,1,1,0,0,0,8,1,3,0,4,0,0,6,0,0,0,0,0,0,0,0,0,0,2,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T23:53:11.574Z"}},{"type":"Public","name":"monarch-app","owner":"monarch-initiative","isFork":false,"description":"Monarch Initiative website and API","allTopics":["monarchinitiative"],"primaryLanguage":{"name":"Vue","color":"#41b883"},"pullRequestCount":5,"issueCount":107,"starsCount":15,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[1,4,1,4,5,8,3,10,5,2,7,6,7,4,5,4,10,12,5,11,8,5,1,5,2,4,2,11,7,0,3,5,7,2,4,9,5,3,2,7,9,4,4,7,0,5,2,0,1,2,1,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T23:21:07.445Z"}},{"type":"Public","name":"monarchr","owner":"monarch-initiative","isFork":false,"description":"R package for easy access, manipulation, and analysis of Monarch KG data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":6,"starsCount":5,"forksCount":1,"license":"Other","participation":[0,1,0,1,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,1,3,2,9,3,5,0,2,1,0,0,2,1,1,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T22:44:48.652Z"}},{"type":"Public","name":"omim","owner":"monarch-initiative","isFork":false,"description":"Data ingest pipeline for OMIM.","allTopics":["biomedical-informatics","ontology-engineering"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":38,"starsCount":6,"forksCount":2,"license":null,"participation":[0,2,10,0,3,0,1,0,0,0,0,1,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8,0,0,0,0,0,1,2,0,0,0,0,2,0,1,0,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T22:07:06.664Z"}},{"type":"Public","name":"ontogpt","owner":"monarch-initiative","isFork":false,"description":"LLM-based ontological extraction tools, including SPIRES","allTopics":["nlp","ai","information-extraction","named-entity-recognition","language-models","ner","data-modeling","relation-extraction","monarchinitiative","obofoundry","gpt-3","linkml","large-language-models","llm","oaklib","chat-gpt"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":8,"issueCount":75,"starsCount":531,"forksCount":66,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[58,54,28,32,9,10,25,2,34,26,8,14,20,5,40,59,22,19,5,42,18,15,4,24,6,5,20,16,29,0,24,29,10,10,2,63,1,17,9,15,17,29,11,8,2,13,6,5,27,6,22,26],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T21:08:43.408Z"}},{"type":"Public","name":"pheval.exomiser","owner":"monarch-initiative","isFork":false,"description":"Exomiser plugin for PhEval.","allTopics":["monarchinitiative"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":2,"starsCount":4,"forksCount":0,"license":null,"participation":[0,3,6,0,0,2,14,0,0,0,0,1,0,0,0,3,0,0,0,0,2,3,0,0,0,0,1,0,0,0,0,0,0,0,0,0,2,2,0,3,5,3,0,4,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T12:55:26.775Z"}},{"type":"Public","name":"phenopacket2prompt","owner":"monarch-initiative","isFork":false,"description":"GA4GH Phenopacket to LLM prompt","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,15,0,0,0,0,0,0,15,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,13,2,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T12:07:53.928Z"}},{"type":"Public","name":"monarch-trapi-kp","owner":"monarch-initiative","isFork":false,"description":"NCATS Translator ARA TRAPI wrapper for the Monarch Initiative system","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T05:02:44.688Z"}},{"type":"Public","name":"monarch-ingest","owner":"monarch-initiative","isFork":false,"description":"Data ingest application for Monarch Initiative knowledge graph using Koza","allTopics":["python","neo4j","solr","sqlite","semantic-web","monarchinitiative","kgx","knowledge-graphs","linkml","linkml-schema"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":28,"starsCount":14,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T22:04:37.719Z"}},{"type":"Public","name":"dragon-ai-results","owner":"monarch-initiative","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":11,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T18:37:30.047Z"}},{"type":"Public","name":"phenomics-assistant","owner":"monarch-initiative","isFork":false,"description":"LLM retrieval augmented generation agent for Monarch.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":17,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T16:33:31.243Z"}},{"type":"Public","name":"genophenocorr","owner":"monarch-initiative","isFork":false,"description":"Genotype Phenotype Correlation ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":25,"starsCount":4,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T16:19:58.858Z"}},{"type":"Public","name":"monarch-documentation","owner":"monarch-initiative","isFork":false,"description":"Technical documentation for all Monarch applications, packages, services and related projects.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":16,"starsCount":4,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T09:00:47.023Z"}},{"type":"Public","name":"medgen","owner":"monarch-initiative","isFork":false,"description":"MedGen ingest.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":8,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T21:53:29.433Z"}},{"type":"Public","name":"malco","owner":"monarch-initiative","isFork":false,"description":"Multilingual Analysis of LLMs for Clinical Observations","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T16:15:00.705Z"}},{"type":"Public","name":"icd11","owner":"monarch-initiative","isFork":false,"description":"ICD11 foundation ingest.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T20:07:43.502Z"}},{"type":"Public","name":"talisman","owner":"monarch-initiative","isFork":true,"description":"LLM-based gene function enrichment tool","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":66,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T19:36:23.172Z"}},{"type":"Public","name":"uri-expression-language","owner":"monarch-initiative","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":1,"starsCount":3,"forksCount":0,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T16:53:14.015Z"}},{"type":"Public","name":"pheval.template","owner":"monarch-initiative","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T11:11:25.994Z"}},{"type":"Public","name":"pheval","owner":"monarch-initiative","isFork":false,"description":"A framework for empirical evaluation of phenotype matching and prioritisation","allTopics":["monarchinitiative"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":25,"starsCount":12,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T09:57:01.753Z"}},{"type":"Public","name":"pyphetools","owner":"monarch-initiative","isFork":false,"description":"Python Phenopacket Tools","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":8,"starsCount":8,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T06:40:22.444Z"}},{"type":"Public","name":"automaxoviewer","owner":"monarch-initiative","isFork":false,"description":"automaxoviewer","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T14:41:58.002Z"}},{"type":"Public","name":"MAxO","owner":"monarch-initiative","isFork":false,"description":"Medical action ontology","allTopics":["medicine","owl","ontology","medical","diagnostics","treatment","monarchinitiative","obofoundry","interventions","treatments"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":78,"starsCount":47,"forksCount":5,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T17:55:51.546Z"}},{"type":"Public","name":"pheval.ontogpt","owner":"monarch-initiative","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T14:32:13.460Z"}},{"type":"Public","name":"monarch-semantic-similarity-profiles","owner":"monarch-initiative","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":7,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T10:30:45.597Z"}},{"type":"Public","name":"koza","owner":"monarch-initiative","isFork":false,"description":"Data transformation framework for LinkML data models","allTopics":["ontology","knowledge-graph","monarchinitiative","obofoundry","linkml","koza","etl"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":23,"starsCount":43,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T05:17:04.033Z"}},{"type":"Public","name":"zfin-genotype-to-phenotype-ingest","owner":"monarch-initiative","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T00:26:11.777Z"}}],"repositoryCount":221,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}