.gitlab-ci.yml

stages:
  - test
  - pages
  - lint
  - deploy

variables:
  TERM: ansi

# --- Stage Templates ----------------------------------------------------------

.test: &test
  stage: test
  cache:
    key: ${CI_COMMIT_REF_SLUG}
    paths:
    - build/
  before_script:
    - python -m pip install -U wheel coverage tqdm pyhmmer
  script:
    - python setup.py list_requirements -s
    - python -m pip install -U -r requirements.txt
    - python setup.py build_data --inplace bdist_wheel
    - python -m pip install --find-links=dist --no-index gecco-tool[train]
    - python -m coverage run -p -m unittest discover -vv
  after_script:
    - python -m coverage combine
    - python -m coverage xml
    - python -m coverage report
  coverage: '/^TOTAL.+?(\d+\%)$/'
  artifacts:
    expire_in: 1 week
    reports:
      coverage_report:
        coverage_format: cobertura
        path: coverage.xml

# --- Stages -------------------------------------------------------------------

# test:python3.6:
#   image: python:3.6
#   <<: *test

# test:python3.7:
#   image: python:3.7
#   <<: *test

# test:python3.8:
#   image: python:3.8
#   <<: *test

# test:python3.9:
#   image: python:3.9
#   <<: *test
#   artifacts:
#     expire_in: 1 week
#     paths:
#       - dist/*.whl
#       - coverage.xml
#     reports:
#       coverage_report:
#         coverage_format: cobertura
#         path: coverage.xml

docs:
  image: python:3.9
  stage: pages
  # dependencies:
  #   - test:python3.9
  before_script:
    - python setup.py list_requirements -s
    - pip install -U -r docs/requirements.txt -r requirements.txt
  script:
    - sphinx-build -b html docs public
  artifacts:
    paths:
      - public

# lint:pydocstyle:
#   image: python:3.9
#   stage: lint
#   before_script:
#     - pip install -U pydocstyle
#   script:
#     - pydocstyle gecco

# lint:mypy:
#   image: python:3.9
#   stage: lint
#   allow_failure: true
#   before_script:
#     - pip install -U mypy
#   script:
#     - mypy gecco

# lint:pylint:
#   image: python:3.9
#   stage: lint
#   allow_failure: true
#   before_script:
#     - pip install -U pylint
#   script:
#     - pylint gecco

# lint:radon:
#   image: python:3.9
#   stage: lint
#   allow_failure: true
#   before_script:
#     - pip install -U radon
#   script:
#     - radon cc -a gecco

# deploy:codecov:
#   image: python:3.9
#   stage: deploy
#   dependencies:
#     - test:python3.9
#   before_script:
#     - pip install -U codecov
#   script:
#     - python -m codecov

# deploy:codacy:
#   image: python:3.9
#   stage: deploy
#   dependencies:
#     - test:python3.9
#   before_script:
#     - pip install -U codacy-coverage
#   script:
#     - python -m codacy -r coverage.xml