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DESCRIPTION
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DESCRIPTION
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Package: bugphyzzAnalyses
Type: Package
Title: Analyses performed with the bugphyzz package
Version: 0.1.14
Authors@R:
c(
person(
'Samuel', 'Gamboa', email = 'Samuel.Gamboa.Tuz@gmail.com',
role = c('aut', 'cre')
)
)
Description: Analyses done with the bugphyzz package.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends:
R (>= 4.3.0),
SummarizedExperiment
Suggests:
bugphyzz,
circlize,
ggplot2,
rmarkdown,
taxPPro,
curatedMetagenomicData,
biobroom,
tidySummarizedExperiment,
ggplot2,
ggrepel,
taxize,
taxizedb,
EnrichmentBrowser,
MicrobiomeBenchmarkData,
tibble,
tidyr,
ontologyIndex,
ontologySimilarity,
BugSigDBStats,
forcats,
circlize,
viridis,
tibble,
data.tree,
SummarizedExperiment,
TreeSummarizedExperiment,
nychanesmicrobiome,
bc3net,
htmltools,
DT,
limma,
pROC,
knitr,
ggbreak,
scales,
data.tree
Remotes:
waldronlab/taxPPro,
waldronlab/bugphyzz,
waldronlab/MicrobiomeBenchmarkData,
waldronlab/BugSigDBStats,
ropensci/taxize@1.0-rc,
waldronlab/nychanesmicrobiome
Imports:
BiocFileCache,
bugsigdbr,
ComplexHeatmap,
dplyr,
magrittr,
purrr,
readr,
statmod,
stringr,
tools,
vroom,
epitools,
sessioninfo,
stats,
pathviewr,
ggpubr
RoxygenNote: 7.3.1
URL: https://github.com/waldronlab/bugphyzzAnalyses
BugReports: https://github.com/waldronlab/bugphyzzAnalyses/issues