AnnData and BitMask index coordination

[NHPatterson]

I have a BitMask with a unique index for each spatial structure, however, it doesn't start at 1 and is doesn't iterate always by 1. Is a value for the index pulled from the AnnData store to match these (i.e., my AnnData has an index in X that matches the values in the bitmask) or is it assumed that it just goes from 1 to n_indices?

[ilan-gold]

I'd be surprised if the value wasn't pulled from the store. Is there any reason to think it isn't, like you're seeing something to suggest otherwise?

[NHPatterson]

Yes indeed, it works as expected. The index of X loads onto the the bitmask appropriately.