Replies: 1 comment 7 replies
-
Hi, thanks for the feedback. What data formats and visualization components are you using? For larger datasets we recommend the AnnData formats. Currently our largest examples are https://portal.hubmapconsortium.org/browse/dataset/43213991a54ce196d406707ffe2e86bd and http://vitessce.io/#?dataset=satija-2020 (both using the AnnData-based format). Do these load fast enough for your use cases? |
Beta Was this translation helpful? Give feedback.
7 replies
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
-
I'm trying the display some Spatial Transcriptomics data that has 3000 cells (barcodes) each with 4300 genes + expression values. It can take 10+ seconds to update and often triggers a browser timeout. Is there anything I can do to improve performance or do I just need to whittle down the number of genes? Thanks!
Edit: I'm also overlaying the cell / gene expression over an .tif image.
Beta Was this translation helpful? Give feedback.
All reactions