{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":60793873,"defaultBranch":"master","name":"genome-tools","ownerLogin":"vierstralab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-06-09T17:33:14.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/128003435?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712015214.0","currentOid":""},"activityList":{"items":[{"before":"ba3b626979037ad308beff042215d0c62d10d500","after":null,"ref":"refs/heads/plotting","pushedAt":"2024-04-01T23:46:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"}},{"before":"e444c0475936832734c77201ab6d4170ec12f9a8","after":"633721c7c4f63f4910513ab8ae2dd5be8da4e86d","ref":"refs/heads/master","pushedAt":"2024-04-01T23:46:48.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Polygon sequence glyphs (#7)\n\n* Sequence plots without hardcoded polygons\r\n\r\n* Update requirements.txt\r\n\r\n* Add Polygon import for sequence plotting\r\n\r\n* Update letter_polygons in seq_plot function\r\n\r\n---------\r\n\r\nCo-authored-by: m1kss <boytsovs.av@gmail.com>","shortMessageHtmlLink":"Polygon sequence glyphs (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2219189879\" data-permission-text=\"Title is private\" data-url=\"https://github.com/vierstralab/genome-tools/issues/7\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/vierstralab/genome-tools/pull/7/hovercard\" href=\"https://github.com/vierstralab/genome-tools/pull/7\">#7</a>)"}},{"before":"c945fde4873b7ddd796757b502927d3580d47c23","after":"ba3b626979037ad308beff042215d0c62d10d500","ref":"refs/heads/plotting","pushedAt":"2024-04-01T23:40:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Update letter_polygons in seq_plot function","shortMessageHtmlLink":"Update letter_polygons in seq_plot function"}},{"before":"9e6189d250b633cbd8a0378829ca245d0cfb4699","after":"c945fde4873b7ddd796757b502927d3580d47c23","ref":"refs/heads/plotting","pushedAt":"2024-04-01T23:22:35.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Merge branch 'plotting' of https://github.com/vierstralab/genome-tools into plotting","shortMessageHtmlLink":"Merge branch 'plotting' of <a href=\"https://github.com/vierstralab/genome-tools\">https://github.com/vierstralab/genome-tools</a> …"}},{"before":"96a1aef0ca574ea21a9480e416e1664cdd8fd817","after":"9e6189d250b633cbd8a0378829ca245d0cfb4699","ref":"refs/heads/plotting","pushedAt":"2024-04-01T22:10:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Update requirements.txt","shortMessageHtmlLink":"Update requirements.txt"}},{"before":null,"after":"96a1aef0ca574ea21a9480e416e1664cdd8fd817","ref":"refs/heads/plotting","pushedAt":"2024-03-30T02:45:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Sequence plots without hardcoded polygons","shortMessageHtmlLink":"Sequence plots without hardcoded polygons"}},{"before":"cd95144bbecf8350cbed218f7ad5fed2bc604dad","after":"e444c0475936832734c77201ab6d4170ec12f9a8","ref":"refs/heads/master","pushedAt":"2024-03-20T01:38:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Fix return type in stratified_sampling function","shortMessageHtmlLink":"Fix return type in stratified_sampling function"}},{"before":"1211ef00968063b00047df5e9cfc0df495fde0e3","after":"cd95144bbecf8350cbed218f7ad5fed2bc604dad","ref":"refs/heads/master","pushedAt":"2024-03-20T01:38:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Refactor sampling function to return boolean indicators","shortMessageHtmlLink":"Refactor sampling function to return boolean indicators"}},{"before":"6f099350f255c97e8e671869bcd2ad9c67f68af8","after":"1211ef00968063b00047df5e9cfc0df495fde0e3","ref":"refs/heads/master","pushedAt":"2024-03-20T01:15:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Convert sampled_indicators to boolean values in indices_to_indicators function","shortMessageHtmlLink":"Convert sampled_indicators to boolean values in indices_to_indicators…"}},{"before":"e99b9fe19f1da0e3d03ffa8f17d57404615d9c2a","after":"6f099350f255c97e8e671869bcd2ad9c67f68af8","ref":"refs/heads/master","pushedAt":"2024-03-20T00:53:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Fix bug in stratified_sampling function","shortMessageHtmlLink":"Fix bug in stratified_sampling function"}},{"before":"211885ddb04127a694b3c114914aaac81bc66f7f","after":null,"ref":"refs/heads/sampling","pushedAt":"2024-03-20T00:42:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"}},{"before":"1a88b45bbbc0917ec5a11f4ca79bc08d6b5b83d3","after":"e99b9fe19f1da0e3d03ffa8f17d57404615d9c2a","ref":"refs/heads/master","pushedAt":"2024-03-20T00:41:56.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Sampling (#6)\n\n* Refactor code for improved performance and readability\r\n\r\n* Add fast_sample function to sampling module\r\n\r\n* Update __all__ in sampling/__init__.py\r\n\r\n* Delete sampling module and update utils module\r\n\r\n* Refactor random number generation in sampling.py\r\n\r\n* Refactor fast_sample function to maintain consistency in input sorting\r\n\r\n* Add starting_seed parameter to fast_sample function\r\n\r\n* Fixed sampling index mismatches\r\n\r\n* Add support for random seed in numba sampling functions\r\n\r\n* Fix seed parameter in get_sample_indicators function\r\n\r\n* Refactor sampling function to improve performance\r\n\r\n* Fix seed parameter in sampling_with_seed function\r\n\r\n* Refactor random sampling functions in sampling.py\r\n\r\n* Remove unused function sampling_with_seed()\r\n\r\n* added option to sample with replacing + specify n_to_sample\r\n\r\n* Remove unused import statement\r\n\r\n* Add docstring to stratified_sampling function\r\n\r\n* Fix sorting issue in stratified_sampling function\r\n\r\n* Add ignore_missing_bins parameter to stratified_sampling function\r\n\r\n* Fix reference data not present in sampling data message format\r\n\r\n---------\r\n\r\nCo-authored-by: jvierstra <jvierstra@altius.org>\r\nCo-authored-by: m1kss <boytsovs.av@gmail.com>","shortMessageHtmlLink":"Sampling (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2196345000\" data-permission-text=\"Title is private\" data-url=\"https://github.com/vierstralab/genome-tools/issues/6\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/vierstralab/genome-tools/pull/6/hovercard\" href=\"https://github.com/vierstralab/genome-tools/pull/6\">#6</a>)"}},{"before":"4f941b00527efba7d6eb4d254dae105a28422b65","after":"211885ddb04127a694b3c114914aaac81bc66f7f","ref":"refs/heads/sampling","pushedAt":"2024-03-20T00:39:50.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Merge branch 'master' into sampling","shortMessageHtmlLink":"Merge branch 'master' into sampling"}},{"before":"bad938c3a5199599966a889aa66dccc8d69bd5c1","after":"4f941b00527efba7d6eb4d254dae105a28422b65","ref":"refs/heads/sampling","pushedAt":"2024-03-20T00:25:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Fix reference data not present in sampling data message format","shortMessageHtmlLink":"Fix reference data not present in sampling data message format"}},{"before":null,"after":"bad938c3a5199599966a889aa66dccc8d69bd5c1","ref":"refs/heads/sampling","pushedAt":"2024-03-20T00:19:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Add ignore_missing_bins parameter to stratified_sampling function","shortMessageHtmlLink":"Add ignore_missing_bins parameter to stratified_sampling function"}},{"before":"1092a0dc172386d397ab45c111b7a80c86008e14","after":null,"ref":"refs/heads/sampling","pushedAt":"2024-03-19T22:58:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jvierstra","name":"Jeff Vierstra","path":"/jvierstra","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12842331?s=80&v=4"}},{"before":"e5d1f95350853a6c7656cbae294a55c35b3b0377","after":"1a88b45bbbc0917ec5a11f4ca79bc08d6b5b83d3","ref":"refs/heads/master","pushedAt":"2024-03-19T22:55:59.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jvierstra","name":"Jeff Vierstra","path":"/jvierstra","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12842331?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:jvierstra/genome-tools","shortMessageHtmlLink":"Merge branch 'master' of github.com:jvierstra/genome-tools"}},{"before":null,"after":"1092a0dc172386d397ab45c111b7a80c86008e14","ref":"refs/heads/sampling","pushedAt":"2024-03-19T22:53:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jvierstra","name":"Jeff Vierstra","path":"/jvierstra","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12842331?s=80&v=4"},"commit":{"message":"One hot and some colors","shortMessageHtmlLink":"One hot and some colors"}},{"before":"21ae4ba5bfa129e7d3b1254ad130175094712738","after":null,"ref":"refs/heads/sampling","pushedAt":"2024-03-16T02:10:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"}},{"before":"2a08333d758d9d8b80f3d4d768be7593066720ac","after":"e5d1f95350853a6c7656cbae294a55c35b3b0377","ref":"refs/heads/master","pushedAt":"2024-03-15T23:18:46.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Sampling (#4)\n\n* Refactor code for improved performance and readability\r\n\r\n* Add fast_sample function to sampling module\r\n\r\n* Update __all__ in sampling/__init__.py\r\n\r\n* Delete sampling module and update utils module\r\n\r\n* Refactor random number generation in sampling.py\r\n\r\n* Refactor fast_sample function to maintain consistency in input sorting\r\n\r\n* Add starting_seed parameter to fast_sample function\r\n\r\n* Fixed sampling index mismatches\r\n\r\n* Add support for random seed in numba sampling functions\r\n\r\n* Fix seed parameter in get_sample_indicators function\r\n\r\n* Refactor sampling function to improve performance\r\n\r\n* Fix seed parameter in sampling_with_seed function\r\n\r\n* Refactor random sampling functions in sampling.py\r\n\r\n* Remove unused function sampling_with_seed()\r\n\r\n* added option to sample with replacing + specify n_to_sample\r\n\r\n* Remove unused import statement\r\n\r\n* Add docstring to stratified_sampling function\r\n\r\n* Fix sorting issue in stratified_sampling function\r\n\r\n---------\r\n\r\nCo-authored-by: jvierstra <jvierstra@altius.org>\r\nCo-authored-by: m1kss <boytsovs.av@gmail.com>","shortMessageHtmlLink":"Sampling (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2189600651\" data-permission-text=\"Title is private\" data-url=\"https://github.com/vierstralab/genome-tools/issues/4\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/vierstralab/genome-tools/pull/4/hovercard\" href=\"https://github.com/vierstralab/genome-tools/pull/4\">#4</a>)"}},{"before":"ecc3374eae92900ffe96d32b966835674455bcb3","after":"21ae4ba5bfa129e7d3b1254ad130175094712738","ref":"refs/heads/sampling","pushedAt":"2024-03-14T21:59:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Fix sorting issue in stratified_sampling function","shortMessageHtmlLink":"Fix sorting issue in stratified_sampling function"}},{"before":"29920f1de097120fdf4bcacf02eef503ba8166f0","after":"ecc3374eae92900ffe96d32b966835674455bcb3","ref":"refs/heads/sampling","pushedAt":"2024-03-14T18:09:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Add docstring to stratified_sampling function","shortMessageHtmlLink":"Add docstring to stratified_sampling function"}},{"before":"3cb96b886dbee42ef00f5a560ffd682c4f261100","after":"29920f1de097120fdf4bcacf02eef503ba8166f0","ref":"refs/heads/sampling","pushedAt":"2024-03-14T07:41:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"Remove unused import statement","shortMessageHtmlLink":"Remove unused import statement"}},{"before":"2f08cc4ca42955d4395b14faea02db0df2651268","after":"3cb96b886dbee42ef00f5a560ffd682c4f261100","ref":"refs/heads/sampling","pushedAt":"2024-03-14T07:36:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"M1kss","name":"Alexandr Boytsov","path":"/M1kss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673308?s=80&v=4"},"commit":{"message":"added option to sample with replacing + specify n_to_sample","shortMessageHtmlLink":"added option to sample with replacing + specify n_to_sample"}},{"before":"42d2aa527a45bd4bd6924228deb19f0aea9bef65","after":"2f08cc4ca42955d4395b14faea02db0df2651268","ref":"refs/heads/sampling","pushedAt":"2024-02-20T21:23:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Remove unused function sampling_with_seed()","shortMessageHtmlLink":"Remove unused function sampling_with_seed()"}},{"before":"adf72140529bf52d195f4f96b79448b955911aa3","after":"42d2aa527a45bd4bd6924228deb19f0aea9bef65","ref":"refs/heads/sampling","pushedAt":"2024-02-20T21:20:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Refactor random sampling functions in sampling.py","shortMessageHtmlLink":"Refactor random sampling functions in sampling.py"}},{"before":"4a5e6df5aa3f2f2fda19a4dbc60b52bffa659c31","after":"adf72140529bf52d195f4f96b79448b955911aa3","ref":"refs/heads/sampling","pushedAt":"2024-02-20T21:18:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Fix seed parameter in sampling_with_seed function","shortMessageHtmlLink":"Fix seed parameter in sampling_with_seed function"}},{"before":"ee0f4e036006f47ce57861001fd2506c8d296f3a","after":"4a5e6df5aa3f2f2fda19a4dbc60b52bffa659c31","ref":"refs/heads/sampling","pushedAt":"2024-02-20T20:54:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Refactor sampling function to improve performance","shortMessageHtmlLink":"Refactor sampling function to improve performance"}},{"before":"e29c2d4e470f7eea37016124a96b12c002161cf8","after":"ee0f4e036006f47ce57861001fd2506c8d296f3a","ref":"refs/heads/sampling","pushedAt":"2024-02-20T20:53:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Fix seed parameter in get_sample_indicators function","shortMessageHtmlLink":"Fix seed parameter in get_sample_indicators function"}},{"before":"6d1203af4baffc82da2911aefe1a3a242a03522c","after":"e29c2d4e470f7eea37016124a96b12c002161cf8","ref":"refs/heads/sampling","pushedAt":"2024-02-20T20:50:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wishabc","name":"Sergey Abramov","path":"/wishabc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21673447?s=80&v=4"},"commit":{"message":"Add support for random seed in numba sampling functions","shortMessageHtmlLink":"Add support for random seed in numba sampling functions"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEJPRADQA","startCursor":null,"endCursor":null}},"title":"Activity · vierstralab/genome-tools"}