% VCFCLEANCOMPLEX(1) vcfcleancomplex (vcflib) | vcfcleancomplex (VCF transformation) % Erik Garrison and vcflib contributors
vcfcleancomplex
vcfcleancomplex
Removes reference-matching sequence from complex alleles and adjusts records to reflect positional change.
Generate a VCF stream in which 'long' non-complexalleles have their position corrected.
assumes that VCF records can't overlap 5'->3'
Type: transformation
0 : Success
not 0 : Failure
vcflib(1)
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.