You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
i get the following error trying to run fanc auto:
mitch@macmini _hic % fanc auto SRR027956.fastq -i /Users/mitch/_hic/hg18_chr14.fa -g hg18_chr14.bed .
2023-10-06 11:17:09,460 INFO FAN-C version: 0.9.27
2023-10-06 11:17:09,462 INFO Getting regions
2023-10-06 11:17:09,463 INFO Output folder: ./
2023-10-06 11:17:09,463 INFO Input files: SRR027956.fastq
2023-10-06 11:17:09,463 INFO Input file types: fastq
2023-10-06 11:17:09,463 INFO Final basename: SRR027956 (you can change this with the -n option!)
2023-10-06 11:17:09,463 INFO Creating output folders...
Traceback (most recent call last):
File "/usr/local/bin/fanc", line 127, in
Fanc()
File "/usr/local/bin/fanc", line 93, in init
command([sys.argv[0]] + sys.argv[option_ix:], log_level=log_level, verbosity=verbosity)
File "/Users/mitch/Library/Python/3.9/lib/python/site-packages/fanc/commands/fanc_commands.py", line 123, in auto
return fanc.commands.auto.auto(argv, **kwargs)
File "/Users/mitch/Library/Python/3.9/lib/python/site-packages/fanc/commands/auto.py", line 1097, in auto
if not file_types[i + 1] == 'sam':
IndexError: list index out of range
The text was updated successfully, but these errors were encountered:
i get the following error trying to run fanc auto:
mitch@macmini _hic % fanc auto SRR027956.fastq -i /Users/mitch/_hic/hg18_chr14.fa -g hg18_chr14.bed .
2023-10-06 11:17:09,460 INFO FAN-C version: 0.9.27
2023-10-06 11:17:09,462 INFO Getting regions
2023-10-06 11:17:09,463 INFO Output folder: ./
2023-10-06 11:17:09,463 INFO Input files: SRR027956.fastq
2023-10-06 11:17:09,463 INFO Input file types: fastq
2023-10-06 11:17:09,463 INFO Final basename: SRR027956 (you can change this with the -n option!)
2023-10-06 11:17:09,463 INFO Creating output folders...
Traceback (most recent call last):
File "/usr/local/bin/fanc", line 127, in
Fanc()
File "/usr/local/bin/fanc", line 93, in init
command([sys.argv[0]] + sys.argv[option_ix:], log_level=log_level, verbosity=verbosity)
File "/Users/mitch/Library/Python/3.9/lib/python/site-packages/fanc/commands/fanc_commands.py", line 123, in auto
return fanc.commands.auto.auto(argv, **kwargs)
File "/Users/mitch/Library/Python/3.9/lib/python/site-packages/fanc/commands/auto.py", line 1097, in auto
if not file_types[i + 1] == 'sam':
IndexError: list index out of range
The text was updated successfully, but these errors were encountered: