Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Flaky TestReadPairs.test_filter_inward test #150

Open
Apteryks opened this issue Apr 2, 2023 · 0 comments
Open

Flaky TestReadPairs.test_filter_inward test #150

Apteryks opened this issue Apr 2, 2023 · 0 comments

Comments

@Apteryks
Copy link

Apteryks commented Apr 2, 2023

Hi,

I've recently encountered the following failure while building the python-fanc package in the Guix CI:

=================================== FAILURES ===================================
_______________________ TestReadPairs.test_filter_inward _______________________

self = <test_pairs.TestReadPairs object at 0x7fff0beae4f0>

    def test_filter_inward(self):
        mask = self.pairs.add_mask_description('inwards', 'Mask read pairs that are inward '
                                                          'facing and closer than 100bp')
        in_filter = InwardPairsFilter(minimum_distance=100, mask=mask)
    
>       assert len(self.pairs) == 44
E       assert 0 == 44
E         +0
E         -44

fanc/test/test_pairs.py:115: AssertionError
---------------------------- Captured stderr setup -----------------------------
Mappability 100% (0 of N/A) |#           | Elapsed Time: 0:00:00 ETA:  --:--:--
Mappability 100% (0 of N/A) |#           | Elapsed Time: 0:00:00 ETA:  --:--:--

The full build log is available at https://ci.guix.gnu.org/build/672406/log/raw.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant