Error in toVisNetworkData(g) : igraph must be a igraph object

[nbutyrate]

Hi

i am trying to run "co_occurence_network". But there id no graph creation i.e.

g <- co_occr$net$graph
NULL

following is the workflow

co_occr <- co_occurence_network(physeq, grouping_column = "AllPos", rhos = c("-0.5", "0.5"),

• method = "cor", qval_threshold = 0.05, select.condition = "Yes", scale.vertex.size = 4, 
  

• scale.edge.width = 10)
  

g <- co_occr$net$graph

data <- toVisNetworkData(g)
Error in toVisNetworkData(g) : igraph must be a igraph object
g
NULL
co_occr
$net
$net$edgelists
pairs trt taxa1 taxa2
1 Lichtheimia Fusarium Yes Lichtheimia Fusarium
2 Aspergillus Cystofilobasidium Yes Aspergillus Cystofilobasidium

[svenyos]

I have the same problem. The graph object in the output from co_occurence_network() is NULL

[cherrypashka]

Hi!
I have the same problem, even on pitlatrine data from example.
data(pitlatrine)
physeq <- taxa_level(pitlatrine, "Phylum")
co_occr <- co_occurence_network(physeq, grouping_column = "Country", rhos = 0.35, scale.vertex.size=3, scale.edge.width=15)
g <- co_occr$net$graph
print(g)
NULL
data <- toVisNetworkData(g)
visNetwork(nodes = data$nodes,
edges = data$edges,
width = 900,
height = 900) %>% visOptions(highlightNearest = TRUE, nodesIdSelection = TRUE)

Error in toVisNetworkData(g) : igraph must be a igraph object

[passdan]

From the future, also having the same issue. Wondering if anyone else managed to solve?

[gdanetzk]

Even further in the future, same issue. Anyone solve it?