vcfstreamsort: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory vcfuniq: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory

[shangguan77]

Hello,I encountered the following problems when using snippy. Has anyone encountered similar problems? snippy is installed with conda.

vcfstreamsort: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory
vcfuniq: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory
Traceback (most recent call last):
File "/home/y17319172851/miniconda3/envs/snippy/bin/vcffirstheader", line 10, in
print(line.strip())
BrokenPipeError: [Errno 32] Broken pipe

[Joshua-Macleod]

Hi @shangguan77!

A response to issue #566 recommended downgrading vcflib from 1.0.2 to 1.0.1.

If you're using conda, try conda install -c bioconda vcflib=1.0.1

I had the same issue and the above recommendation resolved it.

Hope this helps!

[shangguan77]

Hi @shangguan77!

A response to issue #566 recommended downgrading vcflib from 1.0.2 to 1.0.1.

If you're using conda, try conda install -c bioconda vcflib=1.0.1

I had the same issue and the above recommendation resolved it.

Hope this helps!

Thank you very much! the installation was successful using your method.

[Shyamili09]

Hi, I am having same issue.

freebayes: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory

installed vcflib=1.0.1 as suggeted but still same error exists. I am running snippy on cluster. Please lemme know how to solve it.

Please check versions of snippy and vcflib in my conda env