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weird behavior of phyndr_taxonomy #26

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wcornwell opened this issue Jul 6, 2016 · 0 comments
Open

weird behavior of phyndr_taxonomy #26

wcornwell opened this issue Jul 6, 2016 · 0 comments

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@wcornwell
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wcornwell commented Jul 6, 2016

@mwpennell @richfitz If you pass in a taxonomy matrix without rownames, phyndr_taxonomy just returns the tree that you passed in.

This gets confusing because you have to specify taxonlookup::lookup_table(...by_species=TRUE) to create the taxonomy or else nothing works and there is no informative error message.

Should we change this in phyndr or in taxonlookup or both ?

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