Repository for analyses of HHV-6 reactivation using genomics
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Updated
Nov 4, 2023 - HTML
Repository for analyses of HHV-6 reactivation using genomics
Python tool for relative mutation rate of different genes across viral strains.
Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
RecombinHunt (alias for the software contained in this repository) is a Python library implementing a data-driven novel method for identifying contributing lineages and breakpoints in recombinant viral sequences.
Human RNA virus genotyping
EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
Hunting for CMV and HHV-6 in cfDNA sequence
Detect Hepatitis A Virus Infection Clusters
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
VIral GEnome ASsembly pipelines for WGS
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
Linked Multilocus Genotype by Sequencing (LMGSeq) applied to high-throughput quantification of genetic exchange among diverse human Influenza A virus strains
Viral genome assembly pipeline for WGS using ONT
Data portal and API for Center for Viral Systems Biology (CViSB) data
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