Viral genomics analysis pipelines
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Updated
Nov 3, 2020 - Python
Viral genomics analysis pipelines
MyVariant.info: A BioThings API for human variant annotations
A modular annotation tool for genomic variants
A phenotype-based tool for variant prioritization in WES and WGS data
Genomic VCF to tab-separated values
Generic human DNA variant annotation pipeline
using all the bits for echt rapid variant annotation and filtering
A novel management, annotation, and machine learning framework for analyzing cancer mutations
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
A Python GUI VCF viewer for SNP, indels, and TE.
Clinical machine-learning based interpreter of germline mutations.
CADD-SV – a framework to score the effect of structural variants
visual analysis of your VCF files
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Repository for miscellaneous bioinformatics scripts that may be useful to others.
This repository contains an analysis pipeline developed to characterize WGS output
A Snakemake workflow for variant calling using GATK4 best practices
An empirical variant annotation and data evaluation pipeline.
A relational database stores per sample based sequencing data.
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
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