Repository for miscellaneous bioinformatics scripts that may be useful to others.
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Updated
Feb 7, 2017 - Python
Repository for miscellaneous bioinformatics scripts that may be useful to others.
Python wrapper and web-server for Ensembl VEP
Variant annotation and filtration server ALAPY Genome Explorer
This is a public repo to introduce Omni and collect issues and feedback.
Viral genomics analysis pipelines
neural networks to score PubMed search results for similarity to evidence abstracts from ClinVar or CIViC
interactive variant tables for easy filtering
Customized vcf_melt script from pyvcf. Handles snpEff-annotated vcf files
A chamada de variantes envolve a identificação de polimorfismos de nucleotídeo único (SNPs) e pequenas inserções e deleções (indels) em dados de Sequenciamento de Nova Geração (NGS). Nesta pipeline descrevo a detecção de SNP para identificação de possíveis alterações de aminoácidos em proteínas virais.
An empirical variant annotation and data evaluation pipeline.
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
A phenotype-based tool for variant prioritization in WES and WGS data
Clinical machine-learning based interpreter of germline mutations.
visual analysis of your VCF files
Genomic VCF to tab-separated values
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
A relational database stores per sample based sequencing data.
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