a core part of the MiModD package for use as a library
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Updated
Feb 6, 2018 - Python
a core part of the MiModD package for use as a library
Manuscript data and code repository
A tool for automatic classification of sequence variants according to ACMG criteria.
A collection of web tools for biologists
A flexible variant annotator written in Python
Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
Novel mutations are identified in leukemia through variant analysis.
A repository for all code related to my masters project
Workflow for biological validation of germline SNP and indel variant datasets.
A command line tool for predicting gene expression using genotypic data
Bioinformatics pipelines developed while working at the dept of Obs & Gynae
Skeleton for NGS pipeline, now backbone of OVAS project
bcftools for dealing with bcf files.
Management flow using PBS system to analyze sequencing data from Illumina Novaseq6000
a workflow for combining variant calls from SNV analyses done with different callers
R package containing a R Shiny app for somatic genomic variants interpretation and a tool suite to deal with an underlying local structured database.
Tools for analyzing UMIErrorCorrect output
Protein folding on VKGL data using FoldX and AlphaFold2
Several bioinformatics projects: sequence alignment, machine learning, GUI development, etc.
R package containing a R Shiny app for germline genomic variants interpretation, and a tool suite to deal with an underlying local structured database.
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