A pipeline to to determine the repeat content of genes and their neighboring regions.
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Updated
Jun 2, 2017 - Python
A pipeline to to determine the repeat content of genes and their neighboring regions.
transposon and LD analysis for replicated experimental evolution fruit fly populations
Nextflow workflow for automatic repeat detection, classification and masking
characterization of TEs from low-coverage genomic sequence data
code to analyse RepeatMasker output
SLURM-ready bash scripts to run the complete REPET pipeline
Tn3 Transposon/Toxin Finder
Determine the sequence type of specific transposable elements in bacterial isolates.
TE annotation pipeline and analysis scripts for the insect mobilome publication by Petersen et al.
Composite Transposon Finder
Genotyping of segregating mobile elements insertions
A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
Simultaneous analysis of genes and transposable elements (TEs) from 10X scRNAseq datasets derived from CD and NIBD samples using Alevin.
RepeatMasker Trinity based Parse Script
Singularity image for PASTEC (transposable elements classification tool).
A simple bash pipeline for extension and edge polishing of transposable elements consensi.
a GALAXY-based pipeline for bioinformatic in-depth exploration of small RNA-seq data
Transposon Insertion Finder - Detection of new TE insertions in NGS data
Supplementary to publication "DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows"
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