Simple Python parser for MotEvo.
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Updated
May 25, 2021 - Python
Simple Python parser for MotEvo.
Find putative transcription factor binding domains
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
Predicting transcription factor-DNA binding from sequence
Threshold and p-value computations for Position Weight Matrices
Transcription Factor (TF) binding preference prediction using deep neural networks.
GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis
Prediction of transcription factor binding based on DNA sequence
Code for the BMC Genomics paper (Integrating binding and expression data to predict transcription factors combined function)
Gibbs 3.2 formerly located at http://ccmbweb.ccv.brown.edu/gibbs/gibbs.html
DNA Transcription Factor Binding Prediction (Self-learning Project)
Scripts for motif assessment for HOCOMOCO v10/v11.
A simple genetic algorithm for finding consensus binding sties in DNA sequences in Drosophila
Pipeline for integration different models of transcription factor binding sites
ChIP-seq analysis pipeline encompassing data processing, quality control, alignment, peak calling, annotation and motif analysis.
BiasAway will improve TFBS enrichment analyses and the applied analysis of ChIP-Seq data, particularly for the annotation of reliable TFBSs within ChIP-Seq peaks.
Implementation of BPNet, a base-resolution convolutional neural network for transcription-factor binding prediction, in PyTorch.
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