Multi-platform, free open source software for visualization and image computing.
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Updated
May 14, 2024 - C++
Multi-platform, free open source software for visualization and image computing.
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Preprocessing and reconstruction of diffusion MRI
Graph theory analysis of brain MRI data
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
White matter tractography clustering and more...
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
Method for encoding brain connectomes in multidimensional arrays (tensors).
Processing and visualization tools for quantitative MRI data
Introduction to dMRI
MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning
Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.
Magnetic resonance imaging and tractography with R
A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
ORG Fiber Clustering White Matter Atlas
FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution
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