tandem-repeats
Here are 27 public repositories matching this topic...
Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.
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Jun 9, 2018 - Java
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
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Nov 22, 2019 - Python
R package to get the most out of the results from TRAL
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Dec 2, 2019 - R
This program can detect the already-known sequence in DNA.
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May 5, 2020 - Jupyter Notebook
This program can detect repeated sequences in DNA.
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May 5, 2020 - Jupyter Notebook
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
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May 27, 2020 - C++
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Oct 21, 2020 - C
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Jan 3, 2021 - Shell
Supporting code for the microsatellite genotyping paper introducing CHIIMP
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Feb 1, 2021 - Makefile
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
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Mar 13, 2021 - C++
Targeted characterisation of short structural variation.
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Jan 12, 2022 - Python
🧬 A curated list of awesome resources for repeat DNA research
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Mar 5, 2022
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
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Jul 11, 2022 - Python
Universal STR Allele Toolkit (USAT) for viewing and comparison
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Nov 26, 2022 - Java
Discover VNTR-associated DELs that are hard to find using Illumina reads
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Jan 17, 2023 - Jupyter Notebook
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Jul 19, 2023 - C
Computational, High-throughput Individual Identification through Microsatellite Profiling
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Aug 9, 2023 - R
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