🧬 A curated list of awesome resources for repeat DNA research
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Updated
Mar 5, 2022
🧬 A curated list of awesome resources for repeat DNA research
Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.
R package to get the most out of the results from TRAL
This program can detect the already-known sequence in DNA.
This program can detect repeated sequences in DNA.
Discover VNTR-associated DELs that are hard to find using Illumina reads
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
Supporting code for the microsatellite genotyping paper introducing CHIIMP
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
Targeted characterisation of short structural variation.
Computational, High-throughput Individual Identification through Microsatellite Profiling
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
Universal STR Allele Toolkit (USAT) for viewing and comparison
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
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