🧬 A curated list of awesome resources for repeat DNA research
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Updated
Mar 5, 2022
🧬 A curated list of awesome resources for repeat DNA research
Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.
Discover VNTR-associated DELs that are hard to find using Illumina reads
This program can detect repeated sequences in DNA.
Universal STR Allele Toolkit (USAT) for viewing and comparison
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
A python library for decomposing and visualizing tandem repeat sequences
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
Targeted characterisation of short structural variation.
R package to get the most out of the results from TRAL
This program can detect the already-known sequence in DNA.
Supporting code for the microsatellite genotyping paper introducing CHIIMP
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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