snrna-seq
Here are 11 public repositories matching this topic...
An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.
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Jun 20, 2022 - Python
snRNA_seq portion of the spatialDLPFC project
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May 11, 2023 - HTML
Spatial alignment of single cell transcriptomic data.
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Aug 24, 2023 - Jupyter Notebook
A tool for single cell genomics data processing and analysis
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Feb 20, 2024 - Shell
A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
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Feb 23, 2024 - R
A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
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Apr 11, 2024 - R
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
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May 3, 2024 - R
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
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May 27, 2024 - R
habenulaPilot project code repository
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Jun 6, 2024 - HTML
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