This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
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Updated
May 3, 2024 - Python
This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy
MATLAB package to analyze single-molecule FRET data
Single-molecule force spectroscopy calibration
Maximum likelihood fits for low photon count data - For active develeopment visit gitlab.peulen.xyz
ASCAM is Advanced Single Channel Analysis for Mac (and others)
Lima - Demultiplex Barcoded PacBio Samples
A modular single-molecule analysis interface
Detection of Molecules plugin for ImageJ, Utrecht University
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
Single-moecule imaging and computation with RNA
Single Molecule Fluorescence Simulator Toolkit
Dwell time analysis of single-molecule force-spectroscopy data
A useful tool for working with Oxford Nanoimager microscope single-molecule localization data.
single molecule tracking
Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data
A simulator for single molecule FRET experiments of freely diffusing particles.
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories
Data analysis for Ingargiola et al. PLOS ONE (2017) doi:10.1101/085027
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